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常用的生物信息学网址大全,非常全面
作者:hbshumo 日期:2006年12月26日 来源:不详 人气:  我要评论(0)
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用生物信息学数据库和分析工具网址   数据库   因特网网址   网上生物信息学教程  EMBL biocomputing tutorials    http://www.bio.cam.ac.uk/Embnetut/Gcg/index.html Plant genome dababase tutorial   http://www.nal.usda.gov/pgdic     生物信息学机构   
用生物信息学数据库和分析工具网址   数据库   因特网网址   网上生物信息学教程  EMBL biocomputing tutorials    http://www.bio.cam.ac.uk/Embnetut/Gcg/index.html Plant genome dababase tutorial   http://www.nal.usda.gov/pgdic     生物信息学机构    NCBI   http://www.ncbi.nlm.nih.gov/   International Nucleotide Sequence Database Collaboration.   http://www.ncbi.nlm.nih.gov/collab/ EBI   http://www.ebi.ac.uk/ USDA   http://www.nal.usda.gov/ Sanger Centre   http://genomic.sanger.ac.uk/ 北京大学生物信息学中心   http://www.cbi.pku.edu.cn     数据库信息发布及其它    GenBank Release Notes   ftp://ncbi.nlm.nih.gov/genbank/gbrel.txt   dbEST summary report   http://www.ncbi.nlm.nih.gov/dbEST/dbESTsummarv.html   EMBL release notes      http://www.genome.ad.jp/dbget-bin/show man?embl   DDBJ release notes      http://www.ddbj.nig.ac.jp/ddbjnew/ddbj relnote.html   Eukaryotic promoter database release notes   http://www.genome.ad.jp/dbget/dbget2.html   SwissProt release notes      http://www.genome.ad.jp/dbget-bin/show man?swissprot   PIR release notes    http://www.genome.ad.jp/dbget-bin/show man?pir   PRF release notes   http://www.genome.ad.jp/dbget-bin/show man?prf   PDBSTR release notes      http://www.genome.ad.jp/dbget-bin/show man?pdbstr   Prosite release notes      http://www.genome.ad.jp/dbget-bin/show man?prosite   PDB release notes      http://www.genome.ad.jp/dbget-bin/show man?pdb   KEGG release notes      http://www.genome.ad.jp/dbget-bin/show man?pathway     核苷酸数据库    GenBank   http://www.ncbi.nlm.nih.gov/   dbEST   http://www.ncbi.nlm.nih.gov/dbEST/index.html   dbSTS   http://www.ncbi.nlm.nih.gov/dbSTS/index.html dbGSS   http://www2.ncbi.nlm.nih.gov/dbGSS/index.html   Genome (NCBI)   http://www.ncbi.nlm.nih.gov/Entrez/Genome/org.html   dbSNP   http://www.ncbi.nlm.nih.gov/SNP/   HTGS   http://www.ncbi.nlm.nih.gov/HTGS/   UniGene   http://www.ncbi.nlm.nih.gov/UniGene/ EMBL核苷酸数据库      http://www.ebi.ac.uk/embl Genome (EBI)   http://www.ebi.ac.uk/genomes/ 向EMBL数据库提交序列   http://www.ebi.ac.uk/embl/Submission/webin.html DDBJ     http://www.ddbj.nig.ac.jp/ Plant R gene database   http://www.ncgr.org/rgenes       启动子数据库    Eukaryotic promoter database   http://www.epd.isb-sib.ch   http://www.genome.ad.jp/dbget/dbget2.html     转录因子数据库  FRANSFAC   http://transfac.gbf.de ooTFD   http://www.ifti.org   蛋白质数据库  SWISS-PROT或TrEMBL      http://www.ebi.ac.uk/swissprot/   http://www.expasy.ch/sprot/ PIR   http://www-nbrf.georgetown.edu/pir/ PRF      http://www.prf.or.jp/ PDBSTR   http://www.genome.ad.jp/dbget-bin/www bfind?pdbstr-today Prosite     http://www.expasy.ch/sprot/prosite.html     结构数据库  PDB      http://www.rcsb.org/pdb   http://www.pdb.org NDB      http://ndbserver.rutgers.edu/NDB/ndb.html   http://ndbserver.rutgers.edu/ DNA-Binding Protein Database   http://ndbserver.rutgers.edu/NDB/structure-finder/dnabind/index.html NMR Nucleic Acids Database   http://ndbserver.rutgers.edu/NDB/structure-finder/nmr/index.html Protein Plus Database   http://ndbserver.rutgers.edu/NDB/structure-finder/protein/index.html Swiss 3Dimage     http://www.expasy.ch/sw3d/ SCOP     http://scop.mrc-lmb.cam.ac.uk/scop/ CATH     http://www.biochem.ucl.ac.uk/bsm/cath/   酶、代谢和调控路径数据库  KEGG    http://www.genome.ad.jp/kegg/kegg2.html Enzyme Nomenclature Database      http://expasy.hcuge.ch/sprot/enzyme.html Protein Kinase Resource (PKR)   http://www.sdsc.edu/kinases/ LIGAND      http://www.genome.ad.jp/dbget/ligand.html WIT      http://www.cme.msu.edu/WIT/ EcoCyc    http://ecocyc.PangeaSystems.com/ecocyc/ UM-BBD      http://www.labmed.umn.edu/umbbd/   多种代谢路径数据库   http://www.unl.edu/stc-95/ResTools/biotools/biotools8.html   基因调控路径数据库(TRANSPATH)   http://transfac.gbf.de     基因组数据库  日本水稻基因组数据库(RGP)   http://rgp.dna.affrc.go.jp 华大水稻基因组框架图   http://www.genomics.org.cn 欧洲水稻测序(第12染色体)   http://www.genoscope.cns.fr 拟南芥基因组数据库   http://www.arabidopsis.org USDA Database    http://www.nal.usda.gov/ Demeter’s Genomes   http://genome.cornell.edu RiceGenes     http://genome.cornell.edu/cgi-bin/WebAce/webace?db=ricegenes RiceBlastDB    http://genome.cornell.edu/cgi-bin/WebAce/webace?db=riceblastdb FlyBase   http://flybase.bio.indiana.edu/.bin/fbidq.html?FBgn0003075 Mouse Genome Informatics   http://www.informatics.jax.org/bin/query_accession?id=MGI:97555 Saccharomyces Genome Database   http://genome-www.stanford.edu/cgi-bin/dbrun/SacchDB?find+Locus+%22PGK1%22 多种基因组数据库   http://www.hgmp.mrc.ac.uk/GenomeWeb   文献数据库  PubMed   http://www.ncbi.nlm.nih.gov/PubMed/ OMIM   http://www.ncbi.nlm.nih.gov/Omim/ Agricola   http://www.nal.usda.gov/ag98/     关键词为基础的数据库检索  Entrez     http://www.ncbi.nlm.nih.gov/Entrez/ Entrez Nucleotide Sequence Search    http://www.ncbi.nlm.nih.gov/Entrez/nucleotide.html Entrez Protein Sequence Search    http://www.ncbi.nlm.nih.gov/Entrez/protein.html Batch Entrez    http://www.ncbi.nlm.nih.gov/Entrez/batch.html Sequence Retrieval System, India   http://bioinfo.ernet.in:80/srs5/ Sequence Retrieval System, Singapore      http://www.bic.nus.edu.sg:80/srs5/ Sequence Retrieval System, US    http://iubio.bio.indiana.edu:80/srs/srsc Sequence Retrieval System, UK    http://srs.ebi.ac.uk/ GetEntry Nucleotide & Protein Sequence Search   http://ftp2.ddbj.nig.ac.jp:8000/getstart-e.html Database Search with Key Words    http://ftp2.ddbj.nig.ac.jp:8080/dbsearch-e-new.html DBGET/LinkDB    http://www.genome.ad.jp/dbget/dbget2.html     序列为基础的数据库检索  BLAST    http://www.ncbi.nlm.nih.gov/BLAST/ FASTA    http://www2.ebi.ac.uk/fasta3/ BLITZ     http://www2.ebi.ac.uk/bicsw/ SSearch   http://www2.igh.cnrs.fr/bin/ssearch-guess.cgi Electronic PCR   http://www.ncbi.nlm.nih.gov/STS/ Proteome analysis   http://www.ebi.ac.uk/proteome/     多序列分析  Clustal multiple sequence alignment   http://dot.imgen.bcm.tmc.edu:9331/multi-align/Options/clustalw. html BCM   http://dot.imgen.bcm.tmc.edu:9331/multi-align/multi-align.html EBI ClustalW analysis   http://www.ebi.ac.uk   系谱分析  PAUP     http://onyx.si.edu/PAUP/ EBI ClustalW analysis   http://www.ebi.ac.uk GCG package      http://www.gcg.com/ PHYLIP   http://evolution.genetics.washington.edu/phylip.html MEGA/METREE   http://www.bio.psu.edu/imeg Hennig86      http://www.vims.edu/~mes/hennig/software.html GAMBIT   http://www.lifesci.ucla.edu/mcdbio/Faculty/Lake/Research/Programs/ MacClade     http://phylogeny.arizona.edu/macclade/macclade.html Phylogenetic analysis   http://www.unl.edu/stc-95/ResTools/biotools/biotools2.html     基因结构预测分析  GENSCAN    http://genes.mit.edu/GENSCAN.html GeneFinder   http://genomic.sanger.ac.uk/gf/gf.shtml   http://www.softberry.com/nucleo.html Gene Feature Searches      http://dot.imgen.bcm.tmc.edu:9331/ Grail      http://compbio.ornl.gov/Grail-1.3/ GrailEXP   http://grail.lsd.ornl.gov/grailexp/ GeneMark   http://genemark.biology.gatech.edu/GeneMark/hmmchoice.html Veil    http://www.cs.jhu.edu/labs/compbio/veil.html AAT      http://genome.cs.mtu.edu/aat.html GENEID   http://www.imim.es/GeneIdentification/Geneid/geneid_input.html Genlang    http://cbil.humgen.upenn.edu/~sdong/genlang_home.html GeneParser    http://beagle.colorado.edu/~eesnyder/GeneParser.html Glimmer   http://www.cs.jhu.edu/labs/compbio/glimmer.html MZEF     http://www.cshl.org/genefinder Procrustes     http://www-hto.usc.edu/software/procrustes/     蛋白质结构预测分析  Expasy    http://www.expasy.ch/ Predicting protein secondary structure   http://dot.imgen.bcm.tmc.edu:9331/pssprediction/pssp.html Predicting protein 3D Structures      http://dove.embl-heidelberg.de/3D/ Predicting protein structures   http://dot.imgen.bcm.tmc.edu:9331/seq-search/struc-predict.html     其它分析工具和软件  Putative DNA Sequencing Errors Check     http://www.bork.embl-heidelberg.de/Frame/ MatInspector   http://www.gsf.de/cgi-bin/matsearch.pl FastM     http://www.gsf.de/cgi-bin/fastm.pl Web Signal Scan    http://www.dna.affrc.go.jp/htdocs/sigscan/signal.html BCM Search Launcher      http://dot.imgen.bcm.tmc.edu:9331/seq-util/seq-util.html Webcutter     http://www.firstmarket.com/cutter/cut2.html Translate DNA to protein     http://www.expasy.ch/tools/dna.html ABIM     http://www-biol.univ-mrs.fr/english/logligne.html sequence motifs:   Pfam      http://www.sanger.ac.uk/Pfam/   http://pfam.wustl.edu/ ProDom   http://protein.toulouse.inra.fr/prodom.html PRINTS   http://www.biochem.ucl.ac.uk/bsm/dbbrowser/PRINTS/     其它  多种数据库、分析工具和生物信息学机构   http://www.unl.edu/stc-95/Restools/biotools 多种数据库和分析工具   http://www.ebi.ac.uk/Tools/ Comparative sequence analysis   http://www.bork.embl-heidelberg.de/   功能基因组分析  Transcription profiling technologies   http://www.ncbi.nlm.nih.gov/ncicgap/expression_tech_info.html Protocols for cDNA array technology     http://cmgm.stanford.edu/pbrown/array.html Data management and analysis of gene expression arrays   http://www.nhgri.nih.gov/DIR/LCG/15k/HTML/   Examples of commercially available filter arrays:   GeneFiltersTM (Research Genetics)      http://www.resgen.com Gene Discovery Arrays (Genome Systems)      http://www.genomesystems.com AtlasTM Arrays (CLONTECH)     http://www.clontech.com

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